/* * AutoplotUtil.java * * Created on April 1, 2007, 4:02 PM * * To change this template, choose Tools | Template Manager * and open the template in the editor. */ package org.autoplot; import java.awt.Component; import java.awt.Graphics2D; import java.awt.Image; import java.awt.RenderingHints; import java.awt.geom.AffineTransform; import java.awt.image.BufferedImage; import java.util.logging.Level; import org.das2.datum.Datum; import org.das2.datum.DatumRange; import org.das2.datum.DatumRangeUtil; import org.das2.datum.Units; import org.das2.datum.UnitsUtil; import org.das2.graph.DasColumn; import java.io.IOException; import java.io.InputStream; import java.io.InputStreamReader; import java.text.ParseException; import java.util.ArrayList; import java.util.Arrays; import java.util.Collections; import java.util.HashMap; import java.util.List; import java.util.Map; import java.util.Map.Entry; import java.util.logging.Logger; import java.util.prefs.Preferences; import javax.swing.Icon; import javax.swing.ImageIcon; import javax.swing.JDialog; import java.awt.BorderLayout; import java.awt.Container; import java.awt.Dialog; import java.awt.Dimension; import java.awt.GridBagConstraints; import java.awt.GridBagLayout; import java.awt.Window; import java.awt.event.ActionEvent; import java.awt.event.HierarchyEvent; import java.awt.event.HierarchyListener; import java.awt.event.MouseAdapter; import java.awt.event.MouseEvent; import java.io.BufferedReader; import java.io.File; import java.io.FileInputStream; import java.io.FileNotFoundException; import java.io.FileWriter; import java.io.PrintWriter; import java.lang.management.ManagementFactory; import java.lang.reflect.InvocationTargetException; import java.lang.reflect.Method; import java.net.InetAddress; import java.net.URL; import java.net.UnknownHostException; import java.security.KeyManagementException; import java.security.NoSuchAlgorithmException; import java.security.cert.X509Certificate; import java.util.Comparator; import java.util.LinkedHashMap; import java.util.Properties; import java.util.regex.Matcher; import java.util.regex.Pattern; import javax.net.ssl.HostnameVerifier; import javax.net.ssl.HttpsURLConnection; import javax.net.ssl.SSLContext; import javax.net.ssl.SSLSession; import javax.net.ssl.TrustManager; import javax.net.ssl.X509TrustManager; import javax.swing.AbstractAction; import javax.swing.JButton; import javax.swing.JComponent; import javax.swing.JFrame; import javax.swing.JLabel; import javax.swing.JMenu; import javax.swing.JMenuBar; import javax.swing.JMenuItem; import javax.swing.JPanel; import javax.swing.JTable; import javax.swing.JTextField; import javax.swing.table.TableModel; import javax.swing.JOptionPane; import javax.swing.JScrollPane; import javax.swing.SwingUtilities; import javax.swing.border.TitledBorder; import javax.xml.parsers.DocumentBuilder; import javax.xml.parsers.DocumentBuilderFactory; import javax.xml.parsers.ParserConfigurationException; import org.das2.datum.EnumerationUnits; import org.das2.graph.ContoursRenderer; import org.das2.graph.DasCanvas; import org.das2.graph.DasColorBar; import org.das2.graph.DasDevicePosition; import org.das2.graph.DasPlot; import org.das2.graph.DasRow; import org.das2.graph.DefaultPlotSymbol; import org.das2.graph.DigitalRenderer; import org.das2.graph.EventsRenderer; import org.das2.graph.HugeScatterRenderer; import org.das2.graph.PitchAngleDistributionRenderer; import org.das2.graph.PsymConnector; import org.das2.graph.RGBImageRenderer; import org.das2.graph.Renderer; import org.das2.graph.SeriesRenderer; import org.das2.graph.SpectrogramRenderer; import org.das2.graph.SpectrogramRenderer.RebinnerEnum; import org.das2.graph.StackedHistogramRenderer; import org.das2.graph.TickCurveRenderer; import org.das2.graph.VectorPlotRenderer; import org.das2.system.RequestProcessor; import org.das2.util.ExceptionHandler; import org.das2.util.filesystem.FileSystem; import org.das2.util.filesystem.LocalFileSystem; import org.das2.util.filesystem.WebFileSystem; import org.autoplot.bookmarks.Bookmark; import org.autoplot.dom.Application; import org.autoplot.dom.Axis; import org.autoplot.dom.DataSourceFilter; import org.autoplot.dom.DomUtil; import org.autoplot.dom.Options; import org.autoplot.dom.Plot; import org.autoplot.dom.PlotElement; import org.autoplot.dom.PlotElementController; import org.das2.qds.DDataSet; import org.das2.qds.DataSetAnnotations; import org.das2.qds.QDataSet; import org.das2.qds.DataSetUtil; import org.das2.qds.SemanticOps; import org.das2.qds.examples.Schemes; import org.autoplot.datasource.AutoplotSettings; import org.autoplot.datasource.DataSourceUtil; import org.autoplot.datasource.ReferenceCache; import org.autoplot.datasource.URISplit; import org.autoplot.datasource.WindowManager; import org.autoplot.datasource.capability.Caching; import org.autoplot.dom.BindingModel; import org.autoplot.dom.PlotController; import org.das2.graph.BoundsRenderer; import org.das2.graph.PolarPlotRenderer; import org.das2.util.AboutUtil; import org.das2.util.FileUtil; import org.w3c.dom.Document; import org.xml.sax.InputSource; import org.xml.sax.SAXException; /** * Utility functions for Autoplot and other related applications. Note this * has no reference to the specific app AutoplotUI, because this is also used * in the applet which doesn't use AutoplotUI. * @author jbf */ public class AutoplotUtil { public static final int SERIES_SIZE_LIMIT = 80000; private final static Logger logger = org.das2.util.LoggerManager.getLogger("autoplot.gui"); /** * absolute length limit for plots. This is used to limit the elements used in autoranging, etc. */ public final static int DS_LENGTH_LIMIT = 10000000; /** * return the bounding qube for the given render type. This was stolen from Test022. * @param dataSet * @param renderType * @return bounding cube[3,2] * @throws Exception */ @Deprecated public static QDataSet bounds( QDataSet dataSet, RenderType renderType ) throws Exception { return AutoRangeUtil.bounds(dataSet, renderType); } /** * experiment to see if we can get an image of a dataset. * This must be called from off of the event thread. * @param ds * @param width * @param height * @return the image * TODO: test me! */ public static BufferedImage createImage( QDataSet ds, int width, int height ) { DasCanvas c= new DasCanvas( width, height ); createPlot( c, ds, null, null ); BufferedImage im= c.getImage( width, height ); return im; } /** * Create a dasPlot that can be useful to scripts. * @param c the canvas for the plot, or null. * @param ds the dataset * @param recyclable the recyclable dasPlot, or null. * @param cb the colorbar, or null. * @return the DasPlot. */ public static DasPlot createPlot(DasCanvas c, QDataSet ds, DasPlot recyclable, DasColorBar cb) { if ( c==null ) { if ( recyclable!=null ) { c= recyclable.getCanvas(); } if ( c==null ) { c= new DasCanvas(640,480); } } DasRow row; DasColumn col; DasPlot result; if (recyclable != null) { result = recyclable; row = result.getRow(); col = result.getColumn(); } else { row = DasRow.create(c); col = DasColumn.create(c); result = DasPlot.createDummyPlot(); result.addRenderer( new SeriesRenderer() ); } List recycleRends = Arrays.asList(result.getRenderers()); RenderType type; Renderer rend1; Renderer oldRend= null; if ( ds!=null ) { type = AutoplotUtil.guessRenderType(ds); oldRend= recycleRends.get(0); rend1= maybeCreateRenderer( type, oldRend, cb, false); rend1.setDataSet(ds); } else { type = RenderType.series; rend1= new SeriesRenderer(); } if ( RenderTypeUtil.needsColorbar(type) ) { if ( cb==null ) { cb= new DasColorBar( Datum.create(0), Datum.create(1), false ); c.add( cb, row, col.createAttachedColumn( 1.03, 1.07 ) ); rend1.setColorBar(cb); } else { cb.setVisible( true ); //okay, only since this is not used. } } try { if ( ds!=null ) { QDataSet bounds= bounds( ds, type ); result.getXAxis().setDatumRange( DataSetUtil.asDatumRange( bounds.slice(0) ) ); result.getYAxis().setDatumRange( DataSetUtil.asDatumRange( bounds.slice(1) ) ); if ( cb!=null ) { QDataSet ss= bounds.slice(2) ; cb.setDatumRange( DataSetUtil.asDatumRange( ss ) ); cb.setLog( "log".equals( ss.property(QDataSet.SCALE_TYPE) ) ); } } } catch ( Exception ex ) { logger.log( Level.SEVERE, null, ex ); } if ( oldRend!=rend1 ) { result.removeRenderer(oldRend); result.addRenderer(rend1); } if ( recyclable==null ) { c.add(result, row, col); c.revalidate(); c.validate(); } result.resize(); return result; } /** * create a new Icon that is a scaled instance of the first. The image * should be a BufferedImage. * @param icon * @param w * @param h * @return */ public static ImageIcon scaleIcon(ImageIcon icon, int w, int h) { double aspect = icon.getIconHeight() / (double) icon.getIconWidth(); if (h == -1) { h = (int) (w * aspect); } else if (w == -1) { w = (int) (h / aspect); } BufferedImage image = (BufferedImage) icon.getImage(); return new ImageIcon(scaleImage(image, w, h)); } public static BufferedImage scaleImage(BufferedImage image, int w, int h) { BufferedImage result = new BufferedImage(w, h, BufferedImage.TYPE_INT_ARGB); Graphics2D g2 = (Graphics2D) result.getGraphics(); g2.setRenderingHint(RenderingHints.KEY_RENDERING, RenderingHints.VALUE_RENDER_QUALITY); g2.setTransform(AffineTransform.getScaleInstance(w / (double) image.getWidth(), h / (double) image.getHeight())); g2.drawImage(image, 0, 0, null); return result; } public static List getUrls(List recent) { List urls = new ArrayList<>(recent.size()); for (Bookmark b : recent) { if (b instanceof Bookmark.Item) { urls.add(((Bookmark.Item) b).getUri()); } } return urls; } /** * Replace filename references within the DOM, and reset xrange. This was * the often-used ReplaceFile script. This now follows focus. * @param parent focus for response dialogs. * @param dom the application */ public static void replaceFile( Component parent, Application dom ) { DataSourceFilter dsf= dom.getController().getDataSourceFilter(); if ( dsf.getUri()==null || dsf.getUri().equals("") ) { JOptionPane.showMessageDialog( parent, "Focus plot element has no data" ); } else { if ( dsf.getUri().startsWith("vap+internal:") ){ List pes= DomUtil.getParentsFor(dom, dsf.getUri()); if ( pes.isEmpty() ) { JOptionPane.showMessageDialog( parent, "Unable to resolve parents" ); return; } dsf= pes.get(0); } URISplit split= URISplit.parse( dsf.getUri() ); if ( split.file==null || split.file.length()==0 ) { JOptionPane.showMessageDialog( parent, "URI should refer to a file, but this doesn't:
"+dsf.getUri() ); return; } Application dom2= (Application) dom.copy(); String oldf= split.file; ReplaceFilePanel p= new ReplaceFilePanel(); p.setCurrentFile(oldf); int result= AutoplotUtil.showConfirmDialog( parent, p, "Replace Filename", JOptionPane.OK_CANCEL_OPTION ); if ( result==JOptionPane.OK_OPTION ) { for ( DataSourceFilter i: dom2.getDataSourceFilters() ) { String oldf1= i.getUri(); String newf1= oldf1.replace( oldf, p.getSelectedFile() ); i.setUri( newf1 ); } dom.syncTo(dom2); dom.getController().waitUntilIdle(); // set focus and reset zoom x. dom.getController().setDataSourceFilter(dsf); resetZoomX(dom); } } } /** * reload all the data. This should not be called on the event thread. * @param dom */ public static void reloadAll( Application dom ) { ReferenceCache.getInstance().reset(); DataSetAnnotations.getInstance().reset(); for ( DataSourceFilter dsf : dom.getDataSourceFilters() ) { if ( dsf.getUri()!=null && ! dsf.getUri().startsWith("vap+internal:") ) { final DataSourceFilter fdsf= dsf; Caching c= fdsf.getController().getCaching(); if ( c!=null ) { c.reset(); } RequestProcessor.invokeLater( new Runnable() { @Override public void run() { fdsf.getController().update(); } } ); } else { System.err.println( "not updating: " + dsf.getUri() ); } } for ( Plot p: dom.getPlots() ) { if ( p.getTicksURI()!=null && p.getTicksURI().length()>0 ) { String oldTicksURI= p.getTicksURI(); p.setTicksURI(""); p.setTicksURI(oldTicksURI); } } } private static void doSearchToolTips1( final JComponent aThis, Pattern p, Map result ) { String s= aThis.getToolTipText(); boolean foundIt= false; if ( s!=null ) { if ( p.matcher(s).find() ) { result.put( aThis, s ); foundIt= true; } } if ( !foundIt ) { s= null; if ( aThis instanceof javax.swing.JLabel ) { s= ((javax.swing.JLabel)aThis).getText(); } else if ( aThis instanceof javax.swing.JMenuItem ) { s= ((javax.swing.JMenuItem)aThis).getText(); } else if ( aThis instanceof javax.swing.JButton ) { s= ((javax.swing.JButton)aThis).getText(); } else if ( aThis instanceof javax.swing.JCheckBox ) { s= ((javax.swing.JCheckBox)aThis).getText(); } else if ( aThis instanceof JPanel ) { javax.swing.border.Border b= ((javax.swing.JPanel)aThis).getBorder(); if ( b instanceof TitledBorder ) { s= ((TitledBorder)b).getTitle(); } } if ( s!=null && p.matcher(s).find() ) { result.put( aThis, s ); //foundIt= true; } } for ( int i=0; iExperimental Tooltips documentation search. Enter the search keyword:")); panel.add( tf, BorderLayout.SOUTH ); int i= JOptionPane.showConfirmDialog( aThis, panel, "Experimental Tooltips documentation search", JOptionPane.OK_CANCEL_OPTION ); if ( i==JOptionPane.OK_OPTION ) { final String search= tf.getText(); Runnable run= new Runnable() { @Override public void run() { Map result= new LinkedHashMap(); Pattern p= Pattern.compile(search,Pattern.CASE_INSENSITIVE); for ( int i=0; i e: result.entrySet() ) { System.err.println( e.getValue() ); } if ( aThis instanceof JFrame ) { JMenuBar mb= ((JFrame)aThis).getJMenuBar(); for ( int i=0; i" ) ) { int linecount= tooltip.split("
").length; t.setRowHeight(i,linecount*20); } else { t.setRowHeight(i,20 ); } i++; } JScrollPane sp= new JScrollPane(t); showConfirmDialog2( aThis, sp, "Tooltips search results", JOptionPane.OK_CANCEL_OPTION ); } }; new Thread(run).start(); } } /** * show a list of the filesystems * @param parent */ protected static void doManageFilesystems( final Component parent ) { FileSystem[] fss= FileSystem.peekInstances(); Arrays.sort(fss, new Comparator() { @Override public int compare(Object o1, Object o2) { return o1.toString().compareTo(o2.toString()); } }); final JPanel p= new JPanel(); p.setLayout( new GridBagLayout() ); GridBagConstraints c= new GridBagConstraints(); c.gridy=0; c.fill = GridBagConstraints.HORIZONTAL; p.add( new JLabel("Double-click on file system name to reset status"),c ); c.gridy++; for ( FileSystem fs: fss ) { c.weightx= 0.8; c.gridx= 0; c.anchor= GridBagConstraints.WEST; JLabel l= new JLabel( fs.toString() ); p.add( l, c ); final FileSystem ffs= fs; l.addMouseListener(new MouseAdapter() { @Override public void mouseClicked(MouseEvent e) { if ( e.getClickCount()==2 ) { Runnable run= new Runnable() { @Override public void run() { FileSystem.reset(ffs); try { FileSystem x= FileSystem.create(ffs.getRootURI()); } catch (FileSystem.FileSystemOfflineException | UnknownHostException | FileNotFoundException ex) { Logger.getLogger(AutoplotUtil.class.getName()).log(Level.SEVERE, null, ex); } Runnable run2= new Runnable() { @Override public void run() { SwingUtilities.getWindowAncestor(p).setVisible(false); doManageFilesystems( parent ); } }; SwingUtilities.invokeLater(run2); } }; new Thread(run).start(); } } }); c.weightx= 0.1; c.gridx= 1; c.anchor= GridBagConstraints.EAST; p.add( new JLabel(" "), c ); c.weightx= 0.1; c.gridx= 2; c.anchor= GridBagConstraints.EAST; if ( fs instanceof LocalFileSystem ) { p.add( new JLabel( "ok" ), c ); } else if ( fs instanceof WebFileSystem ) { String s= ((WebFileSystem)fs).isOffline() ? "offline" : "ok" ; if (((WebFileSystem)fs).isOffline()) { s= ""+s+"
"+((WebFileSystem)fs).getOfflineMessage(); } l=new JLabel(s); p.add( l, c ); } c.gridy++; } if ( fss.length==0 ) { p.add( new JLabel( "(no active filesystems)" ), c ); } c.weighty= 1.; p.add( new JLabel(" "), c ); JScrollPane pp= new JScrollPane(p); pp.setPreferredSize( new Dimension(640,480) ); pp.getVerticalScrollBar().setUnitIncrement( p.getFont().getSize() ); AutoplotUtil.showMessageDialog( parent, pp, "Active Filesystems", JOptionPane.OK_OPTION ); } /** * check to see if the user has the file HOME/autoplot_data/system.properties, which * if found will cause System.setProperty for each one. This was introduced * to facilitate Craig with his testing of enableReferenceCache=true, and should * make it easier to provide generic extensions. */ public static void maybeLoadSystemProperties() { File config= new File( new File( AutoplotSettings.settings().resolveProperty( AutoplotSettings.PROP_AUTOPLOTDATA ) ), "config" ); if ( !config.exists() ) { if ( !config.mkdirs() ) { logger.log(Level.WARNING, "mkdir {0} failed", config); return; } } File propFile= new File( config, "system.properties" ); if ( !propFile.exists() ) { try (PrintWriter w = new PrintWriter( new FileWriter( propFile ) )) { w.println("# Autoplot loads these system properties on startup. See http://autoplot.org/systemProperties"); w.println(""); w.println("# reference cache allows some URIs to be resolved once per plot."); w.println("#enableReferenceCache=true"); w.println(""); w.println("# use new LANL-requested Nearest Neighbor rebinning that looks at bin boundaries."); w.println("#useLanlNearestNeighbor=true"); w.println(""); w.println("# do check on index and rank with commonly used datasets, at a slight performance cost."); w.println("#rangeChecking=true"); w.println(""); w.println("#email RTEs by default, instead of HTTP POST, when firewall prohibits put calls."); w.println("#autoplot.emailrte=true"); w.println(""); w.println("# use wget to download data instead of Java's built-in network protocols. Should be command line or empty."); w.println("#AP_WGET=/usr/local/wget"); w.println(""); w.println("# use curl to download data instead of Java's built-in network protocols. Should be command line or empty."); w.println("#AP_CURL=/usr/bin/curl"); w.println(""); w.println("# provide option in save dialog to embed data within a zip file."); w.println("#allowEmbedData=true"); w.println(""); w.println("# don't show icon in legend when there is only one renderer."); w.println("#reluctantLegendIcons=true"); w.println(""); w.println("# monitor the event thread for hangs. See autoplot_data/log/, if the app hangs."); w.println("#enableResponseMonitor=true"); w.println(""); w.println("# turn off certificate checks."); w.println("#noCheckCertificate=true"); w.println(""); w.println("# use huge scatter for large data sets."); w.println("#useHugeScatter=true"); w.println(""); w.println("# HAPI cache location."); w.println("#HAPI_DATA=${HOME}/hapi_data"); w.println(""); w.println("# Enable HAPI Caching."); w.println("#hapiServerCache=true"); w.println(""); w.close(); } catch ( IOException ex ) { logger.log(Level.WARNING, "write initial {0} failed. {1}", new Object[] { propFile, ex } ); } } else { logger.log( Level.FINER, "loading %s", propFile ); Properties props= new Properties(); try ( InputStream in=new FileInputStream(propFile) ) { props.load( in ); for ( Entry p: props.entrySet()) { logger.log( Level.FINEST, "%s=%s", new Object[] { p.getKey(), p.getValue() } ); if ( System.getProperty( (String)p.getKey() )==null ) { // command line should override. System.setProperty( (String)p.getKey(), (String)p.getValue() ); } } } catch (IOException ex) { logger.log(Level.SEVERE, ex.getMessage(), ex); } } } /** * put in a place to call where the message is shown assuming the * problem is on the user's end, but provide a button to inspect * the exception. * * @param parent parent component to center the dialog. * @param string the message, a string or html code. * @param ex the wrapped exception * @param exh an exception handler to show the exception. */ public static void showUserExceptionDialog( Component parent, String string, final Exception ex, final ExceptionHandler exh ) { JPanel p= new JPanel( new BorderLayout( ) ); JLabel l1= new JLabel( string ); p.add( l1, BorderLayout.CENTER ); JPanel p1= new JPanel( new BorderLayout() ); p1.add( new JButton( new AbstractAction("Details...") { @Override public void actionPerformed( ActionEvent ev ) { org.das2.util.LoggerManager.logGuiEvent(ev); JComponent c= (JComponent)ev.getSource(); JDialog dia= (JDialog) SwingUtilities.getWindowAncestor(c); dia.dispose(); exh.handleUncaught(ex); } }), BorderLayout.EAST ); p.add( p1, BorderLayout.SOUTH ); JOptionPane.showMessageDialog( parent, p ); } /** * this is a copy of the other autorange, lacking some of its hacks. TODO: why? * This is not used. * @param hist * @param ds * @param properties * @return * @see #autoRange(org.das2.qds.QDataSet, java.util.Map, boolean) */ @Deprecated public static AutoRangeUtil.AutoRangeDescriptor autoRange(QDataSet hist, QDataSet ds, Map properties) { return AutoRangeUtil.autoRange(hist, ds, properties); } /** * convert the legacy AutoRangeDescriptor to a QDataSet bounding cube. * The bounding cube is a rank 1, 2-element dataset with min and max as the * elements, and SCALE_TYPE="log" if the AutoRangeDescriptor log property was * true. * @param ard AutoRangeDescriptor. * @return a rank 1 bounding cube. */ public static QDataSet toDataSet( AutoRangeUtil.AutoRangeDescriptor ard ) { DDataSet result= DDataSet.createRank1(2); Units u= ard.range.getUnits(); if ( u==null ) u= Units.dimensionless; result.putValue(0,ard.range.min().doubleValue(u)); result.putValue(1,ard.range.max().doubleValue(u)); result.putProperty( QDataSet.BINS_0, "min,max" ); if (ard.log) result.putProperty( QDataSet.SCALE_TYPE, "log" ); if ( u!=Units.dimensionless ) result.putProperty(QDataSet.UNITS,u); return result; } public static boolean resetZoomY( Application dom ) { Plot plot= dom.getController().getPlot(); return resetZoomY( dom, plot ); } /** * @param dom * @param plot * @return * @see PlotController#resetZoom(boolean, boolean, boolean) */ public static boolean resetZoomY( Application dom, Plot plot ) { boolean result= true; Axis axis= plot.getYaxis(); List pes= DomUtil.getPlotElementsFor( dom, plot ); boolean alsoBindings= true; // See https://sourceforge.net/p/autoplot/bugs/2149/ if ( alsoBindings ) { List plots= DomUtil.findBindings( dom, plot.getYaxis(), Axis.PROP_RANGE ); for ( BindingModel b : plots ) { Plot other; if ( b.getDstId().equals( plot.getYaxis().getId() ) ) { Axis oa= (Axis)DomUtil.getElementById( dom, b.getSrcId() ); other= (Plot)DomUtil.getPlotForAxis( dom, oa ); } else { Axis oa= (Axis)DomUtil.getElementById( dom, b.getDstId() ); other= (Plot)DomUtil.getPlotForAxis( dom, oa ); } pes.addAll( DomUtil.getPlotElementsFor( dom, other ) ); } } DatumRange range= null; for ( PlotElement pe: pes ) { if ( pe.isActive()==false ) continue; QDataSet ds= pe.getController().getDataSet(); if ( ds!=null ) { ds= SemanticOps.trim( ds, plot.getXaxis().getRange(), null ); if ( ds.rank()>0 && ds.length()==0 ) break; if ( ds.rank()==0 || ( ds.rank()==1 && ds.length()==1 ) ) { if ( ds.rank()==1 ) ds= ds.slice(0); if ( range==null ) { range= new DatumRange( DataSetUtil.asDatum(ds),DataSetUtil.asDatum(ds) ); } else { range= DatumRangeUtil.union( range, DataSetUtil.asDatum(ds) ); } } else { PlotElement pcopy1= (PlotElement)pe.copy(); PlotElementController.doAutoranging(pcopy1, Collections.singletonMap( QDataSet.SCALE_TYPE, (Object)( axis.isLog() ? "log" : "linear" ) ), ds, true ); // :) cast to Object! if ( range==null ) { range= pcopy1.getPlotDefaults().getYaxis().getRange(); } else { range= DatumRangeUtil.union( range, pcopy1.getPlotDefaults().getYaxis().getRange() ); } } } } if ( range!=null && range.width().value()==0 ) { logger.info("Y autorange returns zero-width"); if ( UnitsUtil.isRatioMeasurement(range.getUnits()) && range.min().value()!=0 ) { range= DatumRangeUtil.union( range, range.getUnits().createDatum(0) ); } else { range=null; } } if ( range!=null ) axis.getController().setRangeAutomatically( range, axis.isLog() ); PlotController.doHints( axis, axis.getAutoRangeHints() ); return result; } public static boolean resetZoomX( Application dom ) { Plot plot= dom.getController().getPlot(); return resetZoomX( dom, plot ); } /** * @see PlotController#resetZoom(boolean, boolean, boolean) * @param dom * @param plot * @return */ public static boolean resetZoomX( Application dom, Plot plot ) { boolean result= true; Axis axis= plot.getXaxis(); List pes= DomUtil.getPlotElementsFor( dom, plot ); boolean alsoBindings= true; // See https://sourceforge.net/p/autoplot/bugs/2149/ if ( alsoBindings ) { List plots= DomUtil.findBindings( dom, plot.getXaxis(), Axis.PROP_RANGE ); for ( BindingModel b : plots ) { Plot other; if ( b.getDstId().equals( plot.getXaxis().getId() ) ) { Object oo= DomUtil.getElementById( dom, b.getSrcId() ); if ( oo instanceof Axis ) { Axis oa= (Axis)DomUtil.getElementById( dom, b.getSrcId() ); other= (Plot)DomUtil.getPlotForAxis( dom, oa ); } else { // TODO: look for bindings through Application.timeRange. continue; } } else { Object oo= DomUtil.getElementById( dom, b.getDstId() ); if ( oo instanceof Axis ) { Axis oa= (Axis)oo; other= (Plot)DomUtil.getPlotForAxis( dom, oa ); } else { // TODO: look for bindings through Application.timeRange. continue; } } pes.addAll( DomUtil.getPlotElementsFor( dom, other ) ); } } DatumRange range= null; for ( PlotElement pe: pes ) { if ( pe.isActive()==false ) continue; QDataSet ds= pe.getController().getDataSet(); if ( ds!=null ) { ds= SemanticOps.trim( ds, null, plot.getYaxis().getRange() ); if ( ds.length()==0 ) break; PlotElement pcopy1= (PlotElement)pe.copy(); // TODO: something ain't right below... PlotElementController.doAutoranging( pcopy1, Collections.singletonMap( QDataSet.SCALE_TYPE, (Object)( axis.isLog() ? "log" : "linear" ) ), ds, true ); // :) cast to Object! if ( range==null ) { range= pcopy1.getPlotDefaults().getXaxis().getRange(); } else { range= DatumRangeUtil.union( range, pcopy1.getPlotDefaults().getXaxis().getRange() ); } } } if ( range!=null && range.width().value()==0 ) { logger.info("X autorange returns zero-width"); if ( UnitsUtil.isRatioMeasurement(range.getUnits()) && range.min().value()!=0 ) { range= DatumRangeUtil.union( range, range.getUnits().createDatum(0) ); } else { range=null; } } if ( range!=null ) axis.getController().setRangeAutomatically( range, axis.isLog() ); PlotController.doHints( axis, axis.getAutoRangeHints() ); return result; } public static boolean resetZoomZ( Application dom ) { Plot plot= dom.getController().getPlot(); return resetZoomZ( dom, plot ); } /** * @see PlotController#resetZoom(boolean, boolean, boolean) * @param dom * @param plot * @return */ public static boolean resetZoomZ( Application dom, Plot plot ) { boolean result= true; Axis axis= plot.getZaxis(); List pes= DomUtil.getPlotElementsFor( dom, plot ); boolean alsoBindings= true; // See https://sourceforge.net/p/autoplot/bugs/2149/ if ( alsoBindings ) { List plots= DomUtil.findBindings( dom, plot.getZaxis(), Axis.PROP_RANGE ); for ( BindingModel b : plots ) { Plot other; if ( b.getDstId().equals( plot.getZaxis().getId() ) ) { Axis oa= (Axis)DomUtil.getElementById( dom, b.getSrcId() ); other= (Plot)DomUtil.getPlotForAxis( dom, oa ); } else { Axis oa= (Axis)DomUtil.getElementById( dom, b.getDstId() ); other= (Plot)DomUtil.getPlotForAxis( dom, oa ); } pes.addAll( DomUtil.getPlotElementsFor( dom, other ) ); } } DatumRange range= null; for ( PlotElement pe: pes ) { if ( pe.isActive()==false ) continue; if ( !RenderTypeUtil.needsColorbar(pe.getRenderType()) ) continue; QDataSet ds= pe.getController().getDataSet(); if ( ds!=null ) { ds= SemanticOps.trim( ds, plot.getXaxis().getRange(), plot.getYaxis().getRange() ); if ( ds.length()==0 ) break; PlotElement pcopy1= (PlotElement)pe.copy(); PlotElementController.doAutoranging(pcopy1, Collections.singletonMap( QDataSet.SCALE_TYPE, (Object)( axis.isLog() ? "log" : "linear" ) ), ds, true ); // :) cast to Object! if ( range==null ) { range= pcopy1.getPlotDefaults().getZaxis().getRange(); } else { range= DatumRangeUtil.union( range, pcopy1.getPlotDefaults().getZaxis().getRange() ); } } } if ( range!=null ) axis.getController().setRangeAutomatically( range, axis.isLog() ); PlotController.doHints( axis, axis.getAutoRangeHints() ); return result; } /** * Autorange using the dataset properties * @param ds the dataset, a non-bundle, to be autoranged. * @param properties Additional constraints for properties, such as SCALE_TYPE * @return the range. * @see #autoRange(org.das2.qds.QDataSet, java.util.Map, boolean) */ @Deprecated public static AutoRangeUtil.AutoRangeDescriptor autoRange( QDataSet ds, Map properties ) { return AutoRangeUtil.autoRange(ds, properties); } /** * This early implementation of autoRange calculates the range of the * data, then locates the median to establish a linear or log scale type. * Very early on it tried to establish a robust range as well that would * exclude outliers. * * This should be rewritten to use the recently-implemented AutoHistogram, * which does an efficient, self-configuring, one-pass histogram of the data * that more effectively identifies the data range and outliers. * * TODO: This needs to be reworked. https://sourceforge.net/p/autoplot/bugs/1318/ * * @param ds The dataset, a non-bundle, to be autoranged. * @param properties Additional constraints for properties, such as SCALE_TYPE * @param ignoreDsProps Don't check ds for TYPICAL_MIN and SCALE_TYPE. MONOTONIC is never ignored. * @return the range. * @deprecated * @see AutoRangeUtil#autoRange */ @Deprecated public static AutoRangeUtil.AutoRangeDescriptor autoRange(QDataSet ds, Map properties, boolean ignoreDsProps) { return AutoRangeUtil.autoRange(ds, properties, ignoreDsProps); } /** * open the URL in a browser. Borrowed from http://www.centerkey.com/java/browser/. * @param url the URL. */ public static void openBrowser(String url) { DataSourceUtil.openBrowser(url); } public static Document readDoc(InputStream is) throws SAXException, IOException, ParserConfigurationException { DocumentBuilder builder; builder = DocumentBuilderFactory.newInstance().newDocumentBuilder(); InputSource source = new InputSource(new InputStreamReader(is)); Document document = builder.parse(source); // DOMParser parser = new org.apache.xerces.parsers.DOMParser(); // // Reader in = new BufferedReader(new InputStreamReader(is)); // InputSource input = new org.xml.sax.InputSource(in); // // parser.parse(input); // // Document document = parser.getDocument(); return document; } /** * extract the properties from the dataset into the same format as metadata model returns. * @param ds * @return */ public static Map extractProperties(QDataSet ds) { Map result = DataSetUtil.getProperties(ds); Object v; for (int i = 0; i < QDataSet.MAX_RANK; i++) { final String key = "DEPEND_" + i; if ((v = ds.property(key)) != null) { result.put(key, extractProperties((QDataSet) v)); } } for (int i = 0; i < QDataSet.MAX_PLANE_COUNT; i++) { final String key = "PLANE_" + i; if ((v = ds.property(key)) != null) { result.put(key, extractProperties((QDataSet) v)); } else { break; } } // grab at least the label and units from here if ( SemanticOps.isJoin(ds) && ds.length()>0 && ds.rank()==3 ) { QDataSet j1= (QDataSet)ds.slice(0).property(QDataSet.DEPEND_1); if ( j1!=null ) { Map h1= (Map) result.get(QDataSet.DEPEND_1); if ( h1==null ) h1= new HashMap(); Object v1; v1= j1.property(QDataSet.LABEL); if ( v1!=null ) h1.put( QDataSet.LABEL, v1 ); v1= j1.property(QDataSet.UNITS); if ( v1!=null ) h1.put( QDataSet.UNITS, v1 ); result.put( QDataSet.DEPEND_1, h1 ); } } return result; } /** * combine the two properties trees, using values from the first when both contain the same property. * @param properties * @param deflt * @return */ public static Map mergeProperties(Map properties, Map deflt) { if (deflt == null) return properties; HashMap result = new HashMap<>(deflt); for (Entry entry : properties.entrySet()) { Object val = entry.getValue(); String key = entry.getKey(); if (val instanceof Map) { result.put(key, mergeProperties((Map) val, (Map) deflt.get(key))); } else { result.put(key, val); } } return result; } /** * support restricted security environment by checking permissions before * checking property. * @param name * @param deft * @return */ public static String getProperty(String name, String deft) { try { return System.getProperty(name, deft); } catch (SecurityException ex) { return deft; } } /** * set the device position, using spec string like "+5em,80%-5em" * @param row the row/column to modify * @param spec the spec * @throws java.text.ParseException */ public static void setDevicePosition(DasDevicePosition row, String spec) throws ParseException { int i = spec.indexOf(','); if (i == -1) throw new IllegalArgumentException("spec must contain one comma"); double[] ddmin = DasDevicePosition.parseLayoutStr(spec.substring(0, i)); double[] ddmax = DasDevicePosition.parseLayoutStr(spec.substring(i + 1)); row.setMinimum(ddmin[0]); row.setEmMinimum(ddmin[1]); row.setPtMinimum((int) ddmin[2]); row.setMaximum(ddmax[0]); row.setEmMaximum(ddmax[1]); row.setPtMaximum((int) ddmax[2]); } public static String formatDevicePosition(DasDevicePosition pos) { return DasDevicePosition.formatLayoutStr(pos, true) + ", " + DasDevicePosition.formatLayoutStr(pos, false); } private static boolean isVectorOrBundleIndex(QDataSet dep1) { boolean result = false; Units dep1Units = (Units) dep1.property(QDataSet.UNITS); if (dep1Units != null && dep1Units instanceof EnumerationUnits) { result = true; } if (dep1.property(QDataSet.COORDINATE_FRAME) != null) { result = true; } return result; } /** * @see org.autoplot.datasource.DataSourceUtil#guessRenderType(org.das2.qds.QDataSet), which will become the official version. * @see https://autoplot.org/developer.guessRenderType * @param fillds * @return */ public static RenderType guessRenderType(QDataSet fillds) { RenderType spec; RenderType specPref= RenderType.spectrogram; Options o= new Options(); Preferences prefs= AutoplotSettings.settings().getPreferences( o.getClass() ); //TODO: because this is static? boolean nn= prefs.getBoolean(Options.PROP_NEARESTNEIGHBOR,o.isNearestNeighbor()); if ( nn ) { specPref = RenderType.nnSpectrogram; } boolean useHugeScatter= "true".equals( System.getProperty("useHugeScatter","true") ); String srenderType= (String) fillds.property(QDataSet.RENDER_TYPE); if ( srenderType!=null ) { if ( srenderType.equals("time_series") ) { //TODO: CDAWeb time_series will be fixed to "series" once it can automatically reduce data. if ( useHugeScatter && fillds.length() > SERIES_SIZE_LIMIT) { spec = RenderType.hugeScatter; } else { spec = RenderType.series; } return spec; } else if ( srenderType.equals("waveform" ) ) { if ( useHugeScatter ) { spec = RenderType.hugeScatter; } else { spec = RenderType.series; } return spec; } try { if ( srenderType.equals("spectrogram") ) { spec= specPref; } else { spec = RenderType.valueOf(srenderType); } return spec; } catch (IllegalArgumentException e) { int i= srenderType.indexOf('>'); if ( i>-1 ) { try { srenderType= srenderType.substring(0,i); if ( srenderType.equals("spectrogram") ) { // allow user preference here. spec= specPref; } else { spec = RenderType.valueOf(srenderType.substring(0,i)); } return spec; } catch (IllegalArgumentException e2) { System.err.println("unable to resolve render type for: "+srenderType + " in " +fillds ); //e.printStackTrace(); // okay. we didn't recognize the render type } } } } QDataSet dep1 = (QDataSet) fillds.property(QDataSet.DEPEND_1); QDataSet plane0 = (QDataSet) fillds.property(QDataSet.PLANE_0); QDataSet bundle1= (QDataSet) fillds.property(QDataSet.BUNDLE_1); QDataSet dep0= (QDataSet) fillds.property(QDataSet.DEPEND_0); if ( fillds.property( QDataSet.JOIN_0 )!=null ) { if ( fillds.length()==0 ) { return RenderType.series; } dep1 = (QDataSet) fillds.property(QDataSet.DEPEND_1,0); plane0 = (QDataSet) fillds.property(QDataSet.PLANE_0,0); bundle1= (QDataSet) fillds.property(QDataSet.BUNDLE_1,0); } if ( fillds.rank()==2 ) { if ( SemanticOps.isRank2Waveform(fillds) ) { if ( useHugeScatter ) { return RenderType.hugeScatter; } else { return RenderType.series; } } } if (fillds.rank() >= 2) { boolean trivialBundle= false; // is the bundle really describing anything? if ( dep1!=null && !isVectorOrBundleIndex(dep1) ) { if ( bundle1!=null && bundle1.length()>0 ) { trivialBundle= true; Units u0= (Units)bundle1.property(QDataSet.UNITS,0); for ( int j=0; j SERIES_SIZE_LIMIT) { spec = RenderType.hugeScatter; } else { spec = RenderType.series; } if ( bundle1!=null ) { if ( bundle1.length()==3 && bundle1.property(QDataSet.DEPEND_0,2)!=null ) { // bad kludge spec= RenderType.colorScatter; } else if ( dep0==null && bundle1.length() == 3 && bundle1.property(QDataSet.DEPENDNAME_0, 2) != null) { // bad kludge spec= RenderType.colorScatter; } else if ( Schemes.isXYZScatter(fillds) && fillds.property(QDataSet.DEPEND_0)==null && !Schemes.isEventsList(fillds) ) { spec= RenderType.colorScatter; } else if ( Schemes.isXYScatter(fillds) && fillds.property(QDataSet.DEPEND_0)==null ) { spec= RenderType.scatter; } else if ( bundle1.length()==3 || bundle1.length()==4 || bundle1.length()==5 ) { if ( Schemes.isEventsList(fillds) ) { spec= RenderType.eventsBar; } else { Units u3= (Units) bundle1.property(QDataSet.UNITS,bundle1.length()-1); if ( UnitsUtil.isOrdinalMeasurement(u3) ) { spec= RenderType.digital; } } } else { Units u3= (Units) bundle1.property(QDataSet.UNITS,bundle1.length()-1); if ( u3!=null && UnitsUtil.isOrdinalMeasurement(u3) ) { spec= RenderType.eventsBar; } } } } else { int[] dims= DataSetUtil.qubeDims(fillds); if ( dep1==null && fillds.rank()==2 && fillds.length()>3 && fillds.length(0)<4 ) { // Vector quantities without labels. [3x3] is a left a matrix. spec = RenderType.series; } else if ( fillds.rank()==2 && dims!=null && dims[0]==2 && dims[1]==2 ) { spec = RenderType.bounds; } else if ( fillds.rank()==3 && dims!=null && dims[1]==2 && dims[2]==2 ) { spec = RenderType.bounds; } else { spec = specPref; } } } else if ( fillds.rank()==0 || fillds.rank()==1 && ( SemanticOps.isBundle(fillds) || Schemes.isComplexNumbers(fillds) ) ) { spec= RenderType.digital; } else if ( SemanticOps.getUnits(fillds) instanceof EnumerationUnits ) { if ( dep0==null ) { spec= RenderType.digital; } else { spec= RenderType.eventsBar; } } else { if ( useHugeScatter && fillds.length() > SERIES_SIZE_LIMIT) { spec = RenderType.hugeScatter; } else { spec = RenderType.series; } if (plane0 != null) { Units u = (Units) plane0.property(QDataSet.UNITS); if (u==null) u= Units.dimensionless; if (u != null && (UnitsUtil.isRatioMeasurement(u) || UnitsUtil.isIntervalMeasurement(u))) { spec = RenderType.colorScatter; } } } return spec; } /** * The Double.parseDouble contains this javadoc describing how to test for a valid double. * @param myString * @return */ public static boolean isParsableDouble( String myString ) { final String Digits = "(\\p{Digit}+)"; final String HexDigits = "(\\p{XDigit}+)"; // an exponent is 'e' or 'E' followed by an optionally // signed decimal integer. final String Exp = "[eE][+-]?"+Digits; final String fpRegex = ("[\\x00-\\x20]*"+ // Optional leading "whitespace" "[+-]?(" + // Optional sign character "NaN|" + // "NaN" string "Infinity|" + // "Infinity" string // A decimal floating-point string representing a finite positive // number without a leading sign has at most five basic pieces: // Digits . Digits ExponentPart FloatTypeSuffix // // Since this method allows integer-only strings as input // in addition to strings of floating-point literals, the // two sub-patterns below are simplifications of the grammar // productions from the Java Language Specification, 2nd // edition, section 3.10.2. // Digits ._opt Digits_opt ExponentPart_opt FloatTypeSuffix_opt "((("+Digits+"(\\.)?("+Digits+"?)("+Exp+")?)|"+ // . Digits ExponentPart_opt FloatTypeSuffix_opt "(\\.("+Digits+")("+Exp+")?)|"+ // Hexadecimal strings "((" + // 0[xX] HexDigits ._opt BinaryExponent FloatTypeSuffix_opt "(0[xX]" + HexDigits + "(\\.)?)|" + // 0[xX] HexDigits_opt . HexDigits BinaryExponent FloatTypeSuffix_opt "(0[xX]" + HexDigits + "?(\\.)" + HexDigits + ")" + ")[pP][+-]?" + Digits + "))" + "[fFdD]?))" + "[\\x00-\\x20]*");// Optional trailing "whitespace" return java.util.regex.Pattern.matches(fpRegex, myString); } /** * return a renderer that is configured for this renderType. * @param renderType * @param recyclable * @param colorbar * @param justRenderType if true, then just set the render type, other code will configure it. * If true, presumably bindings will set the state. * @return */ public static Renderer maybeCreateRenderer( RenderType renderType, Renderer recyclable, DasColorBar colorbar, boolean justRenderType ) { boolean conf= !justRenderType; if (renderType == RenderType.spectrogram) { SpectrogramRenderer result; if (recyclable != null && recyclable instanceof SpectrogramRenderer) { result= (SpectrogramRenderer) recyclable; if ( conf ) result.setRebinner(SpectrogramRenderer.RebinnerEnum.binAverage); } else { result = new SpectrogramRenderer(null, colorbar); result.setDataSetLoader(null); } if ( conf ) result.setRebinner( SpectrogramRenderer.RebinnerEnum.binAverage ); return result; } else if (renderType == RenderType.nnSpectrogram) { SpectrogramRenderer result; RebinnerEnum nn; if ( "true".equals( System.getProperty("useLanlNearestNeighbor","false") ) ) { nn= SpectrogramRenderer.RebinnerEnum.lanlNearestNeighbor; } else { nn= SpectrogramRenderer.RebinnerEnum.nearestNeighbor; } if (recyclable != null && recyclable instanceof SpectrogramRenderer) { result= (SpectrogramRenderer) recyclable; if ( conf ) result.setRebinner(nn); } else { result = new SpectrogramRenderer(null, colorbar); result.setDataSetLoader(null); if ( conf ) result.setRebinner(nn); return result; } result.setRebinner( nn ); return result; } else if (renderType == RenderType.hugeScatter) { if (recyclable != null && recyclable instanceof HugeScatterRenderer) { return recyclable; } else { HugeScatterRenderer result = new HugeScatterRenderer(null); result.setEnvelope(1); result.setDataSetLoader(null); return result; } } else if ( renderType==RenderType.digital ) { if (recyclable != null && recyclable instanceof DigitalRenderer) { return recyclable; } else { Renderer result = new DigitalRenderer(); result.setDataSetLoader(null); return result; } } else if ( renderType==RenderType.image ) { if (recyclable != null && recyclable instanceof RGBImageRenderer ) { return recyclable; } else { Renderer result = new RGBImageRenderer(); result.setDataSetLoader(null); return result; } } else if ( renderType==RenderType.eventsBar ) { if (recyclable != null && recyclable instanceof EventsRenderer ) { return recyclable; } else { Renderer result = new EventsRenderer(); result.setDataSetLoader(null); return result; } } else if ( renderType==RenderType.stackedHistogram ) { if (recyclable != null && recyclable instanceof StackedHistogramRenderer ) { return recyclable; } else { Renderer result = new StackedHistogramRenderer( colorbar); result.setDataSetLoader(null); return result; } } else if ( renderType==RenderType.vectorPlot ) { if (recyclable != null && recyclable instanceof VectorPlotRenderer ) { return recyclable; } else { Renderer result = new VectorPlotRenderer(); result.setDataSetLoader(null); return result; } } else if ( renderType==RenderType.orbitPlot ) { if (recyclable != null && recyclable instanceof TickCurveRenderer ) { return recyclable; } else { Renderer result = new TickCurveRenderer(); result.setDataSetLoader(null); return result; } } else if ( renderType==RenderType.contour ) { if (recyclable != null && recyclable instanceof ContoursRenderer ) { return recyclable; } else { Renderer result = new ContoursRenderer(); result.setDataSetLoader(null); return result; } } else if ( renderType==RenderType.polar ) { if (recyclable != null && recyclable instanceof PolarPlotRenderer ) { return recyclable; } else { Renderer result = new PolarPlotRenderer( colorbar ); result.setDataSetLoader(null); return result; } } else if ( renderType==RenderType.pitchAngleDistribution ) { if (recyclable != null && recyclable instanceof PitchAngleDistributionRenderer ) { return recyclable; } else { PitchAngleDistributionRenderer result = new PitchAngleDistributionRenderer(colorbar); result.setDataSetLoader(null); return result; } } else if ( renderType==RenderType.bounds ) { if (recyclable != null && recyclable instanceof BoundsRenderer ) { return recyclable; } else { BoundsRenderer result = new BoundsRenderer(); result.setDataSetLoader(null); return result; } } else if ( renderType==RenderType.internal ) { return recyclable; // } else if ( renderType==RenderType.image ) { // if (recyclable != null && recyclable instanceof ImageRenderer) { // return recyclable; // } else { // Renderer result = new ImageRenderer(); // result.setDataSetLoader(null); // colorbar.setVisible(false); // return result; // } } else { SeriesRenderer result; if (recyclable != null && recyclable instanceof SeriesRenderer) { result = (SeriesRenderer) recyclable; } else { result = new SeriesRenderer(); result.setDataSetLoader(null); } if ( justRenderType ) return result; if (renderType == RenderType.colorScatter) { result.setColorBar(colorbar); result.setColorByDataSetId(QDataSet.PLANE_0); //schema: this should be the name of the dataset, or PLANE_x } else { result.setColorByDataSetId(""); //schema } if (renderType == RenderType.series) { result.setPsymConnector(PsymConnector.SOLID); result.setHistogram(false); result.setFillToReference(false); } else if (renderType == RenderType.scatter) { result.setPsymConnector(PsymConnector.NONE); result.setPsym( DefaultPlotSymbol.CIRCLES ); result.setFillToReference(false); } else if (renderType == RenderType.colorScatter) { result.setPsymConnector(PsymConnector.NONE); result.setPsym( DefaultPlotSymbol.CIRCLES ); result.setSymSize(3); result.setFillToReference(false); } else if (renderType == RenderType.stairSteps) { result.setPsymConnector(PsymConnector.SOLID); result.setFillToReference(true); result.setHistogram(true); } else if (renderType == RenderType.fillToZero) { result.setPsymConnector(PsymConnector.SOLID); result.setFillToReference(true); result.setHistogram(false); } return result; } } /** * return 64x64 pixel Autoplot Icon. * @return */ public static Image getAutoplotIcon() { return new ImageIcon(AutoplotUtil.class.getResource("/resources/logo64.png")).getImage(); } public static Image getNoIcon() { return new ImageIcon(AutoplotUtil.class.getResource("/resources/logo64.png")).getImage(); } public static Icon cancelIcon() { return new ImageIcon( AutoplotUtil.class.getResource("/com/cottagesystems/jdiskhog/resources/cancel14.png" ) ); } // private static int styleFromMessageType(int messageType) { // switch (messageType) { // case JOptionPane.ERROR_MESSAGE: // return JRootPane.ERROR_DIALOG; // case JOptionPane.QUESTION_MESSAGE: // return JRootPane.QUESTION_DIALOG; // case JOptionPane.WARNING_MESSAGE: // return JRootPane.WARNING_DIALOG; // case JOptionPane.INFORMATION_MESSAGE: // return JRootPane.INFORMATION_DIALOG; // case JOptionPane.PLAIN_MESSAGE: // default: // return JRootPane.PLAIN_DIALOG; // } // } // // private JDialog createDialog(Component parentComponent, String title, // int style) // throws HeadlessException { // // final JDialog dialog; // //// Window window = JOptionPane.getWindowForComponent(parentComponent); //// if (window instanceof Frame) { //// dialog = new JDialog((Frame)window, title, true); //// } else { //// dialog = new JDialog((Dialog)window, title, true); //// } //// if (window instanceof SwingUtilities.SharedOwnerFrame) { //// WindowListener ownerShutdownListener = //// (WindowListener)SwingUtilities.getSharedOwnerFrameShutdownListener(); //// dialog.addWindowListener(ownerShutdownListener); //// } //// initDialog(dialog, style, parentComponent); //// return dialog; // return null; // } /** * wrapper for displaying messages. This will eventually use the Autoplot icon, etc. * This should be called, not JOptionPane.showMessageDialog(...) * @param parentComponent * @param message, String or Component for the message. * @param title * @param messageType, like JOptionPane.ERROR_MESSAGE, JOptionPane.INFORMATION_MESSAGE, JOptionPane.WARNING_MESSAGE, JOptionPane.QUESTION_MESSAGE, or JOptionPane.PLAIN_MESSAGE */ public static void showMessageDialog( Component parentComponent, Object message, String title, int messageType ) { //JOptionPane.showMessageDialog( parent, message, title, messageType ); //JOptionPane.showOptionDialog( parent, message, title, JOptionPane.DEFAULT_OPTION, messageType, null, null, null); if ( message instanceof Component ) { final Component editorPane= (Component)message; // Sandip Chitale's solution // https://blogs.oracle.com/scblog/entry/tip_making_joptionpane_dialog_resizable // TIP: Make the JOptionPane resizable using the HierarchyListener. editorPane.addHierarchyListener(new HierarchyListener() { @Override public void hierarchyChanged(HierarchyEvent e) { Window window = SwingUtilities.getWindowAncestor(editorPane); if (window instanceof Dialog) { final Dialog dialog = (Dialog)window; if (!dialog.isResizable()) { SwingUtilities.invokeLater( new Runnable() { @Override public void run() { dialog.setResizable(true); } } ); } } } }); } JOptionPane.showMessageDialog( parentComponent, message, title, messageType, new ImageIcon( AutoplotUtil.getAutoplotIcon() ) ); } /** * Wrapper for displaying ok,cancel dialogs. * If the message is a component, then the dialog will be resizeable. * @param parentComponent determines the Frame in which the dialog is displayed; if null, or if the parentComponent has no Frame, a default Frame is used * @param message the String or GUI component to display * @param title the title string for the dialog * @param optionType an int designating the options available on the dialog: YES_NO_OPTION, YES_NO_CANCEL_OPTION, or OK_CANCEL_OPTION * @return JOptionPane.OK_OPTION, JOptionPane.CANCEL_OPTION, etc. */ public static int showConfirmDialog( Component parentComponent, Object message, String title, int optionType ) { if ( optionType!=JOptionPane.OK_CANCEL_OPTION ) { return JOptionPane.showConfirmDialog( parentComponent, message, title, optionType ); } else { return showConfirmDialog2( parentComponent, message, title, optionType ); } } /** * new okay/cancel dialog that is resizable and is made with a simple dialog. * @param parent * @param omessage String or Component. * @param title * @param optionType. This must be OK_CANCEL_OPTION or YES_NO_CANCEL_OPTION * @return JOptionPane.OK_OPTION, JOptionPane.CANCEL_OPTION. */ public static int showConfirmDialog2( Component parent, Object omessage, String title, int optionType ) { return WindowManager.showConfirmDialog( parent, omessage, title, optionType ); } public static final boolean is32bit; public static final String javaVersionWarning; static { String s= System.getProperty("sun.arch.data.model"); if ( s==null ) { // GNU 1.5? s= System.getProperty("os.arch"); is32bit = !s.contains("64"); } else { is32bit = s.equals("32"); } String javaVersion= System.getProperty("java.version"); // applet okay Pattern p= Pattern.compile("(\\d+\\.\\d+)\\.\\d+\\_(\\d+)"); Matcher m= p.matcher(javaVersion); if ( m.matches() ) { double major= Double.parseDouble( m.group(1) ); int minor= Integer.parseInt( m.group(2) ); if ( major<1.8 || ( major==1.8 && minor<102 ) ) { javaVersionWarning= " (oldJRE)"; } else { javaVersionWarning= ""; } } else { javaVersionWarning= ""; } } /** * return the processID (pid), or the fallback if the pid cannot be found. * @param fallback the string (null is okay) to return when the pid cannot be found. * @return the process id or the fallback provided by the caller. * //TODO: Java9 has method for accessing process ID. */ public static String getProcessId(final String fallback) { // Note: may fail in some JVM implementations // therefore fallback has to be provided // something like '@', at least in SUN / Oracle JVMs final String jvmName = ManagementFactory.getRuntimeMXBean().getName(); final int index = jvmName.indexOf('@'); if (index < 1) { // part before '@' empty (index = 0) / '@' not found (index = -1) return fallback; } try { return Long.toString(Long.parseLong(jvmName.substring(0, index))); } catch (NumberFormatException e) { // ignore } return fallback; } /** * return an HTML page showing the current system environment. * @param model * @return string containing HTML * @throws IOException */ public static String getAboutAutoplotHtml( ApplicationModel model) throws IOException { StringBuilder buffy = new StringBuilder(); buffy.append("\n"); URL aboutHtml = AutoplotUI.class.getResource("aboutAutoplot.html"); String releaseTag= AboutUtil.getReleaseTag(); if ( aboutHtml!=null ) { try (BufferedReader reader = new BufferedReader(new InputStreamReader(aboutHtml.openStream()))) { String s = reader.readLine(); while (s != null) { s= s.replaceAll( "\\#\\{tag\\}", releaseTag ); buffy.append(s); s = reader.readLine(); } } } buffy.append("

Build Information:

"); buffy.append("
    "); buffy.append("
  • release tag: ").append(AboutUtil.getReleaseTag()).append("
  • "); buffy.append("
  • build url: ").append(AboutUtil.getJenkinsURL()).append("
  • "); List bi = Util.getBuildInfos(); for (String ss : bi) { buffy.append("
  • ").append(ss); } buffy.append("
" ); buffy.append( "

Open Source Components:

"); buffy.append( "Autoplot uses many open-source components, such as:
"); buffy.append( "jsyntaxpane, Jython, Netbeans (Jython completion), OpenDAP, CDF, FITS, NetCDF, " + "POI HSSF (Excel), Batik (SVG), iText (PDF), JSON, JavaCSV, JPG Metadata Extractor, Imgscalr, utils4j, JDiskHog, and Das2."); buffy.append("

Runtime Information:

"); String javaVersion = System.getProperty("java.version"); // applet okay String arch = System.getProperty("os.arch"); // applet okay java.text.DecimalFormat nf = new java.text.DecimalFormat("0.0"); String mem = nf.format(Runtime.getRuntime().maxMemory() / 1000000 ); String tmem= nf.format(Runtime.getRuntime().totalMemory() / 1000000 ); String fmem= nf.format(Runtime.getRuntime().freeMemory() / 1000000 ); String nmem= "???"; try { // taken from https://svn.apache.org/repos/asf/flume/trunk/flume-ng-core/src/main/java/org/apache/flume/tools/DirectMemoryUtils.java Class VM = Class.forName("sun.misc.VM"); Method maxDirectMemory = VM.getDeclaredMethod("maxDirectMemory", new Class[0] ); Object result = maxDirectMemory.invoke(null, (Object[])null); if (result != null && result instanceof Long) { nmem= nf.format( ((Long)result) / 1000000 ); } } catch ( ClassNotFoundException ex ) { // do nothing, show ??? for native. } catch (NoSuchMethodException | SecurityException | IllegalAccessException | IllegalArgumentException | InvocationTargetException ex) { Logger.getLogger(AutoplotUI.class.getName()).log(Level.SEVERE, null, ex); } String pwd= new File("foo.txt").getAbsoluteFile().getParent(); String pid= getProcessId("???"); String host= InetAddress.getLocalHost().getHostName(); String memWarning=""; if ( ( Runtime.getRuntime().maxMemory() / 1000000 )<700 ) { memWarning= "
  • Available RAM is low, severely limiting capabilities (info)"; } String bits= is32bit ? "32" : "64"; String bitsWarning; bitsWarning= is32bit ? "(severely limiting capabilities)" : "(recommended)"; String javaVersionWarning= ""; Pattern p= Pattern.compile("(\\d+\\.\\d+)\\.\\d+\\_(\\d+)"); Matcher m= p.matcher(javaVersion); if ( m.matches() ) { double major= Double.parseDouble( m.group(1) ); int minor= Integer.parseInt( m.group(2) ); if ( major<1.8 || ( major==1.8 && minor<102 ) ) { javaVersionWarning= "(limiting access to CDAWeb)"; } else { javaVersionWarning= "(recommended)"; } } String autoplotData= AutoplotSettings.settings().resolveProperty( AutoplotSettings.PROP_AUTOPLOTDATA ); String fscache= AutoplotSettings.settings().resolveProperty( AutoplotSettings.PROP_FSCACHE ); String sandbox; if ( model.isSandboxed() ) { SecurityManager sm= System.getSecurityManager(); if ( sm!=null ) { if ( sm==Sandbox.getSandboxManager() ) { sandbox= "true"; } else { sandbox= "true, but not sandbox security manager."; } } else { sandbox= "true, BUT NO SECURITY MANAGER IS PRESENT"; } } else { sandbox= "false"; } String aboutContent = "
      " + "
    • Java version: " + javaVersion + " " + javaVersionWarning + memWarning + "
    • Java home: "+ System.getProperty("java.home") + "
    • max memory (MB): " + mem + " (memory available to process)" + "
    • total memory (MB): " + tmem + " (amount allocated to the process)" + "
    • free memory (MB): " + fmem + " (amount available before more must be allocated)" + "
    • native memory limit (MB): " + nmem + " (amount of native memory available to the process)" + "
    • sandbox: " + sandbox + "
    • noCheckCertificates: " + ( HttpsURLConnection.getDefaultHostnameVerifier()==allHostsValid ) + "
    • arch: " + arch + "
    • release type: " + System.getProperty( AutoplotUI.SYSPROP_AUTOPLOT_RELEASE_TYPE,"???") + "
    • " + bits + " bit Java " + bitsWarning + "
    • hostname: "+ host + "
    • pid: " + pid + "
    • pwd: " + pwd + "
    • autoplotData: "+ autoplotData + "
    • fscache: "+ fscache + "
    "; buffy.append( aboutContent ); buffy.append(""); return buffy.toString(); } private static final TrustManager[] trustAllCerts = new TrustManager[]{ new X509TrustManager() { @Override public java.security.cert.X509Certificate[] getAcceptedIssuers() { return new java.security.cert.X509Certificate[0]; } @Override public void checkClientTrusted(X509Certificate[] certs, String authType) { } @Override public void checkServerTrusted(X509Certificate[] certs, String authType) { } @Override public String toString() { return "AutoplotTrustAllTrustManager"; } } }; // Create all-trusting host name verifier private static final HostnameVerifier allHostsValid = new HostnameVerifier() { @Override public boolean verify(String hostname, SSLSession session) { return true; } @Override public String toString() { return "AutoplotTrustAllHostnamesHostnameManager"; } }; /** * disable certificate checking. A TrustManager and HostnameVerifier which trusts all * names and certs is installed. */ public static void disableCertificates() { logger.info("disabling HTTP certificate checks."); try { System.setProperty(AutoplotUI.SYSPROP_AUTOPLOT_DISABLE_CERTS, String.valueOf(true) ); SSLContext sc = SSLContext.getInstance("SSL"); sc.init(null, trustAllCerts, new java.security.SecureRandom()); HttpsURLConnection.setDefaultSSLSocketFactory(sc.getSocketFactory()); HttpsURLConnection.setDefaultHostnameVerifier(allHostsValid); } catch (NoSuchAlgorithmException | KeyManagementException ex) { logger.log(Level.SEVERE, null, ex); } } public static void maybeInitializeEditorColors() { File config= new File( new File( AutoplotSettings.settings().resolveProperty( AutoplotSettings.PROP_AUTOPLOTDATA ) ), "config" ); if ( !config.exists() ) { if ( !config.mkdirs() ) { logger.log(Level.WARNING, "mkdir {0} failed", config); return; } } File propFile= new File( config, "jsyntaxpane.properties" ); if ( !propFile.exists() ) { try (PrintWriter w = new PrintWriter( new FileWriter( propFile ) )) { w.println("TokenMarker.Color = 0xffeeaa"); w.println("PairMarker.Color = 0xffbb77"); w.println("LineNumbers.Foreground = 0x333300"); w.println("LineNumbers.Background = 0xeeeeff"); w.println("LineNumbers.CurrentBack = 0xccccee"); w.println("CaretColor = 0x000000"); w.println("Background = 0xFFFFFF"); w.println("SelectionColor = 0x556677"); w.println("# These are the various Attributes for each TokenType."); w.println("# The keys of this map are the TokenType Strings, and the values are:"); w.println("# color (hex, or integer), Font.Style attribute"); w.println("# Style is one of: 0 = plain, 1=bold, 2=italic, 3=bold/italic"); w.println("Style.OPERATOR = 0x000000, 0"); w.println("Style.DELIMITER = 0x000000, 1"); w.println("Style.KEYWORD = 0x3333ee, 0"); w.println("Style.KEYWORD2 = 0x3333ee, 3"); w.println("Style.TYPE = 0x000000, 2"); w.println("Style.TYPE2 = 0x000000, 1"); w.println("Style.TYPE3 = 0x000000, 3"); w.println("Style.STRING = 0xcc6600, 0"); w.println("Style.STRING2 = 0xcc6600, 1"); w.println("Style.NUMBER = 0x999933, 1"); w.println("Style.REGEX = 0xcc6600, 0"); w.println("Style.IDENTIFIER = 0x000000, 0"); w.println("Style.COMMENT = 0x339933, 2"); w.println("Style.COMMENT2 = 0x339933, 3"); w.println("Style.DEFAULT = 0x000000, 0"); w.println("Style.WARNING = 0xCC0000, 0"); w.println("Style.ERROR = 0xCC0000, 3"); w.close(); } catch ( IOException ex ) { logger.log(Level.WARNING, "write initial {0} failed. {1}", new Object[] { propFile, ex } ); } } } }